doc: add missing parts

doc/doxygen/Makefile.am

@@ -100,6 +100,8 @@ chapters =	\
 	chapters/api/versioning.doxy \
 	chapters/api/workers.doxy \
 	chapters/api/threads.doxy \
+	chapters/api/bitmap.doxy \
+	chapters/api/tree.doxy \
 	chapters/api/toolbox.doxy \
 	chapters/api/sc_hypervisor/sc_hypervisor.doxy \
 	chapters/api/sc_hypervisor/sc_hypervisor_usage.doxy

doc/doxygen/chapters/45files.doxy

@@ -1,52 +1,59 @@
 /*
  * This file is part of the StarPU Handbook.
  * Copyright (C) 2009--2011  Universit@'e de Bordeaux 1
- * Copyright (C) 2010, 2011, 2012, 2013  Centre National de la Recherche Scientifique
+ * Copyright (C) 2010, 2011, 2012, 2013, 2014  Centre National de la Recherche Scientifique
  * Copyright (C) 2011, 2012 Institut National de Recherche en Informatique et Automatique
  * See the file version.doxy for copying conditions.
 */
 
 /*! \page Files Files
 
-\file starpu_deprecated_api.h
+\file starpu_config.h
+
 \file starpu.h
+\file starpu_bitmap.h
+\file starpu_bound.h
+\file starpu_cublas.h
+\file starpu_cuda.h
 \file starpu_data_filters.h
+\file starpu_data.h
 \file starpu_data_interfaces.h
+\file starpu_deprecated_api.h
 \file starpu_disk.h
-\file starpu_worker.h
-\file starpu_task.h
-\file starpu_task_bundle.h
-\file starpu_task_list.h
-\file starpu_task_util.h
-\file starpu_data.h
-\file starpu_perfmodel.h
-\file starpu_util.h
+\file starpu_driver.h
+\file starpu_expert.h
 \file starpu_fxt.h
-\file starpu_cuda.h
-\file starpu_opencl.h
-\file starpu_sink.h
+\file starpu_hash.h
 \file starpu_mic.h
-\file starpu_scc.h
-\file starpu_expert.h
+\file starpu_opencl.h
+\file starpu_perfmodel.h
 \file starpu_profiling.h
-\file starpu_bound.h
-\file starpu_scheduler.h
+\file starpu_rand.h
+\file starpu_scc.h
 \file starpu_sched_ctx.h
 \file starpu_sched_ctx_hypervisor.h
-\file starpu_top.h
-\file starpu_hash.h
-\file starpu_rand.h
-\file starpu_cublas.h
-\file starpu_driver.h
+\file starpu_scheduler.h
+\file starpu_sink.h
 \file starpu_stdlib.h
+\file starpu_task_bundle.h
+\file starpu_task.h
+\file starpu_task_list.h
+\file starpu_task_util.h
 \file starpu_thread.h
 \file starpu_thread_util.h
+\file starpu_top.h
+\file starpu_tree.h
+\file starpu_util.h
+\file starpu_worker.h
+
 \file starpu_mpi.h
-\file sc_hypervisor.h
+
 \file sc_hypervisor_config.h
+\file sc_hypervisor.h
 \file sc_hypervisor_lp.h
 \file sc_hypervisor_monitoring.h
 \file sc_hypervisor_policy.h
-\file starpu_config.h
+
+\file starpufft.h
 
 */

doc/doxygen/chapters/api/threads.doxy

@@ -11,7 +11,7 @@
 \brief This section describes the thread facilities provided
 by StarPU. The thread function are either implemented on top of the
 pthread library or the Simgrid library when the simulated performance
-mode is enabled (\ref SimulatedPerformance).
+mode is enabled (\ref SimGridSupport).
 
 \def STARPU_PTHREAD_CREATE_ON
 \ingroup API_Threads

doc/doxygen/doxygen-config.cfg.in

@@ -1,7 +1,7 @@
 # StarPU --- Runtime system for heterogeneous multicore architectures.
 #
 # Copyright (C) 2009-2013  Université de Bordeaux 1
-# Copyright (C) 2010, 2011, 2012, 2013  Centre National de la Recherche Scientifique
+# Copyright (C) 2010, 2011, 2012, 2013, 2014  Centre National de la Recherche Scientifique
 # Copyright (C) 2011  Télécom-SudParis
 # Copyright (C) 2011, 2012  Institut National de Recherche en Informatique et Automatique
 #
@@ -20,14 +20,15 @@ INPUT                  = @top_srcdir@/doc/doxygen/chapters \
 		       	 @top_srcdir@/doc/doxygen/chapters/api \
 		       	 @top_srcdir@/doc/doxygen/chapters/api/sc_hypervisor \
                          @top_builddir@/doc/doxygen/starpu_config.h \
+			 @top_srcdir@/include/starpu_bitmap.h \
 	 		 @top_srcdir@/include/starpu_bound.h \
 			 @top_srcdir@/include/starpu_cublas.h \
 			 @top_srcdir@/include/starpu_cuda.h \
 			 @top_srcdir@/include/starpu_data_filters.h \
 			 @top_srcdir@/include/starpu_data.h \
 			 @top_srcdir@/include/starpu_data_interfaces.h \
-			 @top_srcdir@/include/starpu_disk.h \
 			 @top_srcdir@/include/starpu_deprecated_api.h \
+			 @top_srcdir@/include/starpu_disk.h \
 			 @top_srcdir@/include/starpu_driver.h \
 			 @top_srcdir@/include/starpu_expert.h \
 			 @top_srcdir@/include/starpu_fxt.h \
@@ -51,6 +52,7 @@ INPUT                  = @top_srcdir@/doc/doxygen/chapters \
 			 @top_srcdir@/include/starpu_thread.h \
 			 @top_srcdir@/include/starpu_thread_util.h \
 			 @top_srcdir@/include/starpu_top.h \
+			 @top_srcdir@/include/starpu_tree.h \
 			 @top_srcdir@/include/starpu_util.h \
 			 @top_srcdir@/include/starpu_worker.h \
 			 @top_srcdir@/mpi/include/ \

doc/doxygen/refman.tex

@@ -226,6 +226,7 @@ Documentation License”.
 \input{group__API__Standard__Memory__Library}
 \input{group__API__Toolbox}
 \input{group__API__Threads}
+\input{group__API__Bitmap}
 \input{group__API__Workers__Properties}
 \input{group__API__Data__Management}
 \input{group__API__Data__Interfaces}
@@ -255,6 +256,7 @@ Documentation License”.
 \input{group__API__StarPUTop__Interface}
 \input{group__API__Scheduling__Contexts}
 \input{group__API__Scheduling__Policy}
+\input{group__API__Tree}
 \input{group__API__SC__Hypervisor__usage}
 \input{group__API__SC__Hypervisor}
 
@@ -266,6 +268,7 @@ Documentation License”.
 \hypertarget{FileDocumentation}{}
 
 \input{starpu_8h}
+\input{starpu__bitmap_8h}
 \input{starpu__bound_8h}
 \input{starpu__config_8h}
 \input{starpu__cublas_8h}
@@ -297,6 +300,7 @@ Documentation License”.
 \input{starpu__thread_8h}
 \input{starpu__thread__util_8h}
 \input{starpu__top_8h}
+\input{starpu__tree_8h}
 \input{starpu__util_8h}
 \input{starpu__worker_8h}
 \input{starpu__mpi_8h}